From: Genetic origin of patients having spastic paraplegia with or without other neurologic manifestations
Case | Sex/AAO | Subtype | Gene | Chromosomal location | Transcript | Variant | Protein | Hom/het | Inheritance | ACMG | References for reported variants |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | M/12 | SPG3A(P) | ATL1 | chr1451081124 | NM_015915 | c.757G > A | p.V253I | het | AD | P | [12] |
2 | M/20 | SPG4(P) | SPAST | chr2–32,339,776- 32,339,776 | NM_014946 | c.753dupA | p.V252SfsTer13 | het | AD | LP | [13] |
3 | F/4 | SPG4(P) | SPAST | chr2–32,379,455 | NM_014946 | c.1741C > T | p.R581X | het | AD | P | [14] |
4 | F/3 | SPG4(P) | SPAST | chr2–32,379,455 | NM_014946 | c.1741C > T | p.R581X | het | AD | P | [14] |
5 | M/13 | SPG4(C) | SPAST | chr2–32,340,789 | NM_014946 | c.891_892insGa | p.T298DfsTer3 | het | AD | LP | – |
6 | M/24 | SPG4(P) | SPAST | chr2:32352057–32,352,058 | NM_014946 | c.1140delCa | p.F381LfsTer15 | het | AD | LP | – |
7 | F/27 | SPG10(C) | KIF5A | chr12–57,961,297 | NM_004984 | c.610C > T | p.R204W | het | AD | LP | [15] |
8 | F/32 | SPG31(P) | REEP1 | chr2–86,564,617 | NM_022912 | c.17 T > Aa | p.I6N | het | AD | U | – |
9 | F/4 | SPG5A(P) | CYP7B1 | chr8–65,517,390 chr8–65,536,958 | NM_004820 | c.1082G > A c.259 + 2 T > C | p.R361Q Splicing | het | AR | LP/P | |
10 | M/4 | SPG5A(P) | CYP7B1 | chr8–65,509,207-65,509,208 chr8–65,536,958 | NM_004820 | c.1512delGa c.259 + 2 T > C | p.V504fs Splicing | het | AR | P/P | [17] |
11 | M/17 | SPG11(C) | SPG11 | chr15–44,907,576-44,907,577 chr15–44,955,591 | NM_025137 | c.3022delTa c.255G > A | p.Y1008TfsTer29 p.W85X | het | AR | LP/P | [18] |
12 | F/20 | SPG11(C) | SPG11 | chr15–44,856,737-44,856,741 chr15–44,951,490-44,951,490 | NM_025137 | c.7151 + 4_7151 + 7delAGTA c.453dupA | Splicing p.L152IfsTer10 | het | AR | LP/P | |
13 | M/13 | SPG15(C) | ZFYVE26 | chr14–68,228,953 | NM_015346 | c.6336C > Ga | p.Y2112X | hom | AR | LP | – |
14 | F/37 | SPG35(C) | FA2H | chr16–74,750,278 chr16–74,753,052 | NM_024306 | c.1006C > Ga c.620C > T | p.H336D p.T207M | het | AR | U/LP | [8] |
15 | M/3 | SPG46(C) | GBA2 | chr9–35,737,315 chr9–35,738,132 | NM_020944 | c.2635C > T c.2215G > Ta | p.R879W p.D739Y | het | AR | LP/U | [6] |
16 | F/13 | MMACHC | MMACHC | chr1–45,974,520 chr1–45,974,693-45,974,696 | NM_015506 | c.482G > A c.656_658del | p.R161Q p.219_220del | het | AR | P/P | [21] |
17 | M/34 | MMACHC | MMACHC | chr1–45,974,520 chr1–45,974,647 | NM_015506 | c.482G > A c.609G > A | p.R161Q p.W203 X | het | AR | P/LP | [21] |
18 | M/13 | MMACHC | MMACHC | chr1–45,974,482-45,974,484 chr1:45974520 | NM_015506 | c.445_446delTG c.482G > A | p.C149HfsTer32 p.R161Q | het | AR | P/P | |
19 | M/15 | MTHFR | MTHFR | chr1:11855183 chr1:11850900 | NM_005957 | c.1003C > T c.1808C > Ta | p.R335C p.S603F | het | AR | LP/U | [23] |
20 | M/23 | MTHFR | MTHFR | chr1–11,856,345 chr1–11,863,038 | NM_005957 | c.698C > G c.136C > T | p.A233G p.R46W | hom | AR | LP | |
21 | F/29 | CTX | CYP27A1 | chr2–219,674,454 chr2–219,679,132 | NM_000784 | c.410G > A c.1214G > A | p.R137Q p.R405Q | het | AR | LP/LP | |
22 | M/30 | X-ALD | ABCD1 | chrX-153,002,631-153,002,633 | NM_000033 | c.1415_1416del | p.Q472RfsTer82 | hemi | XLR | P | [28] |
23 | M/31 | X-ALD | ABCD1 | chrX:152994860–152,994,860 | NM_000033 | c.1074dupA | p.E359RfsTer42 | hemi | XLR | P | [29] |
24 | M/24 | HLD7 | POLR3A | chr10–79,760,790 chr10–79,737,365 | NM_007055 | c.2422C > Ta c.4044C > Ga | p.R808X p.I1348M | het | AR | LP/U | – |
25 | M/61 | Krabbe’s D | – | – | – | – | – | – | – | – | – |
26 | F/13 | SCAR8 | SYNE1 | chr6–152,554,930 | NM_033071 | c.20485G > Ta | p.E6829X | hom | AR | LP | – |
27 | M/3 | ARSACS | SACS | chr13–23,905,337-23,905,342 | NM_014363 | c.12673_12677del | p.Y4225DfsTer5 | hom | AR | LP | [30] |
28 | M/12 | CMTX4 | AIFM1 | chX-129,271,098 | NM_004208 | c.1030C > T | p.L344F | hemi | XLR | P | [31] |